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TextWrangler
A great little text editor. Perfect for making quick websites like this one!
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Inkscape
Open source vector graphics.
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SketchUp
Easy 3D modeling tool.
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Mercurial
Free, distributed source control management
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123D Design
Haven't checked this out yet, but it's supposed to be great for 3D modeling
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Google Drive
Not a tool per se, but an extremely useful service even if it is part of the panopticon.
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XQuartz
You'll need this to install Inkscape on a Mac running OSX 10.8+
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Rhinoceros 3D
3D Modeling Tool
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Photoshop
2D Photo Editing and Image tool
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template from Codrops