a)pdb2blendscript for Blender which converts a .pdb (protein data bank) file from tabbed text into a 3D model (.3ds or .stl)
b) SliceModeler script for SketchUp
c) SVG (scaleable vector graphics) plug-in for SketchUp
d) re-arranged SVG parts in Illustrator
e) cut from Corel
Taking a tabbed text file, converting it to a 3D model, slicing it up, flattening in out, cutting the 2D file with a laser, and then re-assembling the parts into 3D shapes...